Backbean for for page for uploading ontology. More...

Inheritance diagram for cz.vutbr.fit.knot.annotations.web.UploadOntology:

Collaboration diagram for cz.vutbr.fit.knot.annotations.web.UploadOntology:

Classes
class	AnnotTypeInfo
	Class for additional information about AnnotType. More...

class	BooleanHolder
	Class for boolean reference pass. More...

class	PropertyReference
	Class with reference to OWLObjectProperty or OWLDataProperty. More...

Public Member Functions
String	btnUploadAction ()

String	btnCancelAction ()

UploadedFile	getUploadedFile ()

void	setUploadedFile (UploadedFile uploadedFile)

String	getFileName ()

String	getErrorMessage ()

void	setErrorMessage (String errorMessage)

Boolean	getOntologyUploaded ()

void	setOntologyUploaded (Boolean ontologyUploaded)

String	getSuccessMessage ()

void	setSuccessMessage (String successMessage)

String	getuGroup ()

void	setuGroup (String uGroup)

int	getiMethod ()

void	setiMethod (int iMethod)

String	getImportLang ()

void	setImportLang (String iLanguage)

Static Public Member Functions
static String	getNameFromURI (String uri)

Static Public Attributes
static final int	METHOD_0_ERROR = 0

static final int	METHOD_1_USE = 1

static final int	METHOD_2_UPDATE = 2

Private Member Functions
String	deleteNameInURIIfAnonymousProperty (String originURI, BooleanHolder isAnonymous)

String	deleteNameInURI (String originURI)

String	upperFirstChar (String str)

String	renameIfAnonymous (String uri, BooleanHolder isAnnonymous)

String	renameIfAnonymous (String uri)

int	createAnnotTypeFromIndividual (OWLOntology oModel, OWLDataFactory oFactory, ArrayList< AnnotType > newTypes, Map< String, AnnotType > newTypesMap, Map< String, AnnotTypeInfo > newTypesMapInfo, UserGroup userGroup, OWLIndividual individual, String name, int anonymousIndividualCount)

boolean	processModelPhase1 (OWLOntology oModel, OWLDataFactory oFactory, ArrayList< AnnotType > newTypes, Map< String, AnnotType > newTypesMap, UserGroup userGroup, Map< String, AnnotTypeInfo > newTypesMapInfo)

void	noRangePropertyProcess (AnnotType type, String prName, String prUri, String comment)

String	getStringTypeFromOntologyURI (String stringURI, boolean generateError, BooleanHolder isRequired)

void	processProperties (String prUri, PropertyReference propertyReference, String comment, HashSet< String > subjectSetClassURI, HashSet< String > objectSetClassURI, Map< String, AnnotType > newTypesMap, Map< String, AnnotTypeInfo > newTypesMapInfo, ArrayList< TypeAttrOnto > ontoAttrs, UserGroup userGroup, Set< String > superPropertiesStringSet, Set< String > inversePropertiesID, OWLOntology oModel)

String	addSuperPropertiesToComment (String propertyURI, String comment, Set< String > superClasses)

void	addSuperObjectPropertiesToSet (String propertyURI, Set< OWLObjectPropertyExpression > superProperties, Set< String > superClasses)

void	addSuperDataPropertiesToSet (String propertyURI, Set< OWLDataPropertyExpression > superProperties, Set< String > superClasses)

String	prepareCommentToAdding (String comment)

String	editCommentBaseOnType (String originalComment, boolean action, int objectCount, String propertyName, String oneComment, String moreComment1, String moreComment2)

String	procesSpecialPropertyType (String comment, PropertyReference propertyReference, int objectCount, String newPropertyName, OWLOntology oModel)

String	getComments (OWLDataFactory oFactory, Set< OWLAnnotation > annotationSet)

HashSet< String >	processOWLClassExpression (OWLOntology oModel, OWLClassExpression exp)

void	getInverseEquivalentPropertyUri (Set< String > processedProperty, OWLObjectProperty property, OWLObjectPropertyExpression expression, OWLOntology oModel, Set< OWLObjectPropertyExpression > inversePropertyURI, Set< OWLObjectPropertyExpression > equivalentPropertyURI)

void	processInverseProperty (OWLOntology oModel, OWLObjectProperty property, Set< OWLClassExpression > objectSetExpression, Set< OWLClassExpression > subjectSetExpression, Set< String > inversePropertiesStringSet)

LinkedList< String >	processSuperClass (OWLOntology oModel, OWLClass ontClass)

void	addSuperClassesToAnnotType (ArrayList< AnnotType > newTypes, Map< String, AnnotType > newTypesMap, UserGroup userGroup, AnnotType type, List< String > superClasses)

int	processRdfPropertyAxioms (HashSet< String > objectSetClassURI, HashSet< String > subjectSetClassURI, HashSet< String > ancestorSetClassURI, Set< OWLAxiom > allAxioms)

void	processPropertyWS (String prUri, String prName, String comment, HashSet< String > objectSetClassURI, UserGroup userGroup, ArrayList< TypeAttrOnto > ontoAttrs, Map< String, AnnotType > newTypesMap, boolean isAnonymous)

ArrayList< TypeAttrOnto >	getOntoPropertyMayMove (String propertyURI, ArrayList< TypeAttrOnto > ontoAttrs, ArrayList< TypeAttrOnto > ontoAttrsDeleted)

int	addPropertyInAnonymousClassFromCardinalityRestriction (ArrayList< TypeAttrOnto > ontoAttrs, ArrayList< TypeAttrOnto > ontoAttrsDeleted, OWLVisitorForRestrictionData.CardinalityData data, String typeURI, Map< String, AnnotType > newTypesMap, Map< String, AnnotTypeInfo > newTypesMapInfo, OWLOntology oModel, UserGroup userGroup)

String	getNewNameForAnonymousClass (AnnotTypeInfo info, AnnotType type)

void	processOWLClassExpressionIntersectionOfOneOf (OWLClassExpression exp, HashSet< String > intersectionOfSet, HashSet< String > oneOfSet)

void	addInfoAboutCollectionToComment (AnnotType type, HashSet< String > setOfURI, String commentStr1, String commentStr2, String commentStr3)

void	processUnionOfOneOfIntersectionOf (OWLClass ontClass, AnnotType type, OWLOntology oModel)

boolean	processModelPhase2 (OWLOntology oModel, OWLDataFactory oFactory, ArrayList< AnnotType > newTypes, Map< String, AnnotType > newTypesMap, Map< String, AnnotTypeInfo > newTypesMapInfo, ArrayList< TypeAttrOnto > ontoAttrs, UserGroup userGroup)

Static Private Member Functions
static AnnotType	queryType (String uri, EntityManager em) throws RuntimeException

Private Attributes
String	errorMessage = ""

String	successMessage = ""

Boolean	ontologyUploaded = false

UploadedFile	uploadedFile = null

String	fileName

String	uGroup

int	iMethod = 0

int	recursiveInverseCount = 0

String	importLang

int	lNum

Detailed Description

Backbean for for page for uploading ontology.

Backbean for page for uploading ontology

Author: idytrych

Definition at line 90 of file UploadOntology.java.

Member Function Documentation

void cz.vutbr.fit.knot.annotations.web.UploadOntology.addInfoAboutCollectionToComment	(	AnnotType	type,
		HashSet< String >	setOfURI,
		String	commentStr1,
		String	commentStr2,
		String	commentStr3
	)

private

Add information about oneOf, unionOf and intersectionOf to comment

Parameters

type	Information about type.
setOfURI	This class is in collection.
commentStr1	1. constant to comment.
commentStr2	2. constant to comment.
commentStr3	3. constant to comment.

Definition at line 1574 of file UploadOntology.java.

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int cz.vutbr.fit.knot.annotations.web.UploadOntology.addPropertyInAnonymousClassFromCardinalityRestriction	(	ArrayList< TypeAttrOnto >	ontoAttrs,
		ArrayList< TypeAttrOnto >	ontoAttrsDeleted,
		OWLVisitorForRestrictionData.CardinalityData	data,
		String	typeURI,
		Map< String, AnnotType >	newTypesMap,
		Map< String, AnnotTypeInfo >	newTypesMapInfo,
		OWLOntology	oModel,
		UserGroup	userGroup
	)

private

Add property to anonymous class. Property is marked only in restriction.

Parameters

ontoAttrs	List with attributes of unknown types of annotations
ontoAttrsDeleted	List with attributes of known types of annotations (types are known from restriction in anonymous class)
data	Information about restriction.
typeURI	Subject class URI.
newTypesMap	Map with new (imported) types of annotations
newTypesMapInfo	Map with informations about new (imported) types of annotations
oModel	Ontology model
userGroup	User group in which uploaded types will be shared

Returns: Count of new atributes.

Definition at line 1419 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.addSuperClassesToAnnotType	(	ArrayList< AnnotType >	newTypes,
		Map< String, AnnotType >	newTypesMap,
		UserGroup	userGroup,
		AnnotType	type,
		List< String >	superClasses
	)

private

Add list of super-classes to AnnotType object.

Parameters

newTypes	List with new (imported) types of annotations
newTypesMap	Map with new (imported) types of annotations
userGroup	User group in which uploaded types will be shared
type	AnnotType object.
superClasses	List of super classes URI. This list is fill up in this function.

Definition at line 1167 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.addSuperDataPropertiesToSet	(	String	propertyURI,
		Set< OWLDataPropertyExpression >	superProperties,
		Set< String >	superClasses
	)

private

This function is for OWLDatatypeProperty. It create set of superProperties URI.

Parameters

propertyURI	Property URI.
superProperties	Set of superProperties as OWLObjectPropertyExpression.
superClasses	Set of superProperties as String (URI).

Definition at line 831 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.addSuperObjectPropertiesToSet	(	String	propertyURI,
		Set< OWLObjectPropertyExpression >	superProperties,
		Set< String >	superClasses
	)

private

This function is for OWLObjectProperty. It create set of superProperties URI.

Parameters

propertyURI	Property URI.
superProperties	Set of superProperties as OWLObjectPropertyExpression.
superClasses	Set of superProperties as String (URI).

Definition at line 804 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.addSuperPropertiesToComment	(	String	propertyURI,
		String	comment,
		Set< String >	superClasses
	)

private

Add information about superProperties to comment of property.

Parameters

propertyURI	Property URI.
comment	Origin comment.
superClasses	Set of super classes URI.

Returns: New comment.

Definition at line 776 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.btnCancelAction ( )

Action listener for cancel button

Returns: Returns page outcome (null to stay here)

Definition at line 3139 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.btnUploadAction ( )

Action listener for upload button

Returns: Returns page outcome (identificator of next page or null to stay here)

Definition at line 2673 of file UploadOntology.java.

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int cz.vutbr.fit.knot.annotations.web.UploadOntology.createAnnotTypeFromIndividual	(	OWLOntology	oModel,
		OWLDataFactory	oFactory,
		ArrayList< AnnotType >	newTypes,
		Map< String, AnnotType >	newTypesMap,
		Map< String, AnnotTypeInfo >	newTypesMapInfo,
		UserGroup	userGroup,
		OWLIndividual	individual,
		String	name,
		int	anonymousIndividualCount
	)

private

Create AnnotType object from OWL object (individual).

Parameters

oModel	Ontology model
oFactory	Ontology factory
newTypes	List with new (imported) types of annotations
newTypesMap	Map with new (imported) types of annotations
newTypesMapInfo	Map with information about element in newTypesMap
userGroup	User group in which uploaded types will be shared
individual	Individual
name	Individual name.
anonymousIndividualCount	Count of parsed anonymous individuals.

Returns: New count of parsed anonymous individuals.

Definition at line 403 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.deleteNameInURI ( String originURI )

private

Delete name in URI

Parameters

originURI

Returns: Uri without name

Definition at line 328 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.deleteNameInURIIfAnonymousProperty	(	String	originURI,
		BooleanHolder	isAnonymous
	)

private

Delete name in URI if anonymous property. Old anonymous uri type example: http://www.co-ode.org/ontologies/pizza/pizza2.owl#genid4 to http://www.co-ode.org/ontologies/pizza/pizza2.owl#

Parameters

originURI	Original URI
isAnonymous	Output parameter - if anonymous, it will be set to true, false otherwise

Returns: Returns URI without name

Definition at line 293 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.editCommentBaseOnType	(	String	originalComment,
		boolean	action,
		int	objectCount,
		String	propertyName,
		String	oneComment,
		String	moreComment1,
		String	moreComment2
	)

private

Add property type information to property comment. For example, type can be "reflexive", "functional", etc.

Parameters

originalComment	Original comment.
action	If true, property is of selected type.
objectCount	Count of property object.
propertyName	Property name.
oneComment	Text to comment, if property has one object.
moreComment1	First text to comment, if property has more objects.
moreComment2	Second text to comment, if property has more objects

Returns: New comment.

Definition at line 880 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.getComments	(	OWLDataFactory	oFactory,
		Set< OWLAnnotation >	annotationSet
	)

private

Get comments from annotationSet (annotation of OWL Class).

Parameters

oFactory	Ontology factory
annotationSet	Set of annotation of OWL Class.

Returns: Comment.

Definition at line 961 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.getErrorMessage ( )

Gets error message displayed in form

Returns: Returns error message displayed in form

Definition at line 3177 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.getFileName ( )

Gets uploaded file name

Returns: Returns uploaded file name

Definition at line 3168 of file UploadOntology.java.

int cz.vutbr.fit.knot.annotations.web.UploadOntology.getiMethod ( )

Gets selected import method

Returns: Returns selected import method

Definition at line 3249 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.getImportLang ( )

Gets selected import language

Returns: Returns selected import language

Definition at line 3267 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.getInverseEquivalentPropertyUri	(	Set< String >	processedProperty,
		OWLObjectProperty	property,
		OWLObjectPropertyExpression	expression,
		OWLOntology	oModel,
		Set< OWLObjectPropertyExpression >	inversePropertyURI,
		Set< OWLObjectPropertyExpression >	equivalentPropertyURI
	)

private

Get inverse ane equivalent properties of property. Recursive function. Property or expression argument should be null.

Parameters

processedProperty	URI of properties, that has been already processed.
property	Property object.
expression	Expression object.
oModel	Ontology model
inversePropertyURI	Set of inverse properties URI
equivalentPropertyURI	Set of equivalent properties URI

Definition at line 1024 of file UploadOntology.java.

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static String cz.vutbr.fit.knot.annotations.web.UploadOntology.getNameFromURI ( String uri )

static

Get class name from URI.

Parameters

uri

Returns: Name

Definition at line 378 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.getNewNameForAnonymousClass	(	AnnotTypeInfo	info,
		AnnotType	type
	)

private

Create new name for anonymous class.

Parameters

info	AnnotTypeInfo object for class
type	AnnotType object for class

Returns: New name

Definition at line 1459 of file UploadOntology.java.

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Boolean cz.vutbr.fit.knot.annotations.web.UploadOntology.getOntologyUploaded ( )

Gets uploading indicator

Returns: Returns uploading indicator

Definition at line 3195 of file UploadOntology.java.

ArrayList<TypeAttrOnto> cz.vutbr.fit.knot.annotations.web.UploadOntology.getOntoPropertyMayMove	(	String	propertyURI,
		ArrayList< TypeAttrOnto >	ontoAttrs,
		ArrayList< TypeAttrOnto >	ontoAttrsDeleted
	)

private

Find properties in ontoAttrs, if found, remove from ontoAttrs and add to ontoAttrsDeleted This is for restriction in anonymous class.

Parameters

propertyURI	Uri of property in restriction.
ontoAttrs	List with attributes of unknown types of annotations
ontoAttrsDeleted	List with attributes of known types of annotations (types are known from restriction in anonymous class)

Returns: If found, all properties in set, else null.

Definition at line 1368 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.getStringTypeFromOntologyURI	(	String	stringURI,
		boolean	generateError,
		BooleanHolder	isRequired
	)

private

Convert datatype URI in ontology to datatype name, used in this server.

Parameters

stringURI	Datatype URI in ontology.
generateError	If true, then generate error, when URI is not corrected.
isRequired	This function set this value to true, if attribute should be required.

Returns: Datatype name in server.

Definition at line 534 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.getSuccessMessage ( )

Gets success message displayed in form

Returns: Returns success message displayed in form

Definition at line 3213 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.getuGroup ( )

Gets user group in which uploaded types will be shared

Returns: Returns user group in which uploaded types will be shared

Definition at line 3231 of file UploadOntology.java.

UploadedFile cz.vutbr.fit.knot.annotations.web.UploadOntology.getUploadedFile ( )

Gets uploaded file

Returns: Returns uploaded file

Definition at line 3150 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.noRangePropertyProcess	(	AnnotType	type,
		String	prName,
		String	prUri,
		String	comment
	)

private

Add attribute with no object (no range) to AnnotType.

Parameters

type	AnnotType object.
prName	Property name.
prUri	Property URI.
comment	Property comment.

Definition at line 505 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.prepareCommentToAdding ( String comment )

private

Prepare comment string to add another comment.

Parameters

comment Origin comment.

Returns: New comment.

Definition at line 855 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.processInverseProperty	(	OWLOntology	oModel,
		OWLObjectProperty	property,
		Set< OWLClassExpression >	objectSetExpression,
		Set< OWLClassExpression >	subjectSetExpression,
		Set< String >	inversePropertiesStringSet
	)

private

Parameters

oModel	Ontology model
property	Property object
objectSetExpression	Set of object class expression
subjectSetExpression	Set of subject class expression
inversePropertiesStringSet	Set of inverse properties URI. This set is fill with data up in this function.

Definition at line 1077 of file UploadOntology.java.

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boolean cz.vutbr.fit.knot.annotations.web.UploadOntology.processModelPhase1	(	OWLOntology	oModel,
		OWLDataFactory	oFactory,
		ArrayList< AnnotType >	newTypes,
		Map< String, AnnotType >	newTypesMap,
		UserGroup	userGroup,
		Map< String, AnnotTypeInfo >	newTypesMapInfo
	)

private

Processing of ontology model - phase 1:

get classes and create types of annotations

Parameters

oModel	Ontology model
oFactory	Ontology factory
newTypes	List with new (imported) types of annotations
newTypesMap	Map with new (imported) types of annotations
userGroup	User group in which uploaded types will be shared
newTypesMapInfo	Map with information about element in newTypesMap

Returns: If error occurred, returns true, false otherwise

Definition at line 461 of file UploadOntology.java.

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boolean cz.vutbr.fit.knot.annotations.web.UploadOntology.processModelPhase2	(	OWLOntology	oModel,
		OWLDataFactory	oFactory,
		ArrayList< AnnotType >	newTypes,
		Map< String, AnnotType >	newTypesMap,
		Map< String, AnnotTypeInfo >	newTypesMapInfo,
		ArrayList< TypeAttrOnto >	ontoAttrs,
		UserGroup	userGroup
	)

private

Processing of ontology model - phase 2:

get properties and create attributes of types of annotations
assign ancestors and primary ancestors to types of annotations

Parameters

oModel	Ontology model
oFactory	Ontology factory
newTypes	List with new (imported) types of annotations
newTypesMap	Map with new (imported) types of annotations
newTypesMapInfo	Information about newNewTypesMap
ontoAttrs	List with attributes of unknown types of annotations
userGroup	User group in which uploaded types will be shared

Returns: If error occurred, returns true, false otherwise

Definition at line 1673 of file UploadOntology.java.

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HashSet<String> cz.vutbr.fit.knot.annotations.web.UploadOntology.processOWLClassExpression	(	OWLOntology	oModel,
		OWLClassExpression	exp
	)

private

Get all class URI from OWLClassExpression. This function is used for get subject (domain) and object (range) from property.

Parameters

oModel	Ontology model.
exp	OWLClassExpression value.

Returns: Set of class URI

Definition at line 995 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.processOWLClassExpressionIntersectionOfOneOf	(	OWLClassExpression	exp,
		HashSet< String >	intersectionOfSet,
		HashSet< String >	oneOfSet
	)

private

Get oneOf and intersectionOf classes URI from OWLClassExpression.

Parameters

exp	OWLClassExpression value.
intersectionOfSet	This function add URI of class to this set.
oneOfSet	This function add URI of class to this set.

Definition at line 1545 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.procesSpecialPropertyType	(	String	comment,
		PropertyReference	propertyReference,
		int	objectCount,
		String	newPropertyName,
		OWLOntology	oModel
	)

private

Add information about all types to property comment.

Parameters

comment	Original comment.
propertyReference	Reference to The OWL API structure for this property.
objectCount	Count of property object.
newPropertyName	Property name.
oModel	Ontology model.

Returns: New comment.

Definition at line 906 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.processProperties	(	String	prUri,
		PropertyReference	propertyReference,
		String	comment,
		HashSet< String >	subjectSetClassURI,
		HashSet< String >	objectSetClassURI,
		Map< String, AnnotType >	newTypesMap,
		Map< String, AnnotTypeInfo >	newTypesMapInfo,
		ArrayList< TypeAttrOnto >	ontoAttrs,
		UserGroup	userGroup,
		Set< String >	superPropertiesStringSet,
		Set< String >	inversePropertiesID,
		OWLOntology	oModel
	)

private

Add property to AnnotType object in newTypesMap.

Parameters

prUri	Property URI in ontology.
propertyReference	Reference to The OWL API structure for this property.
comment	Comment.
subjectSetClassURI	Set of subject URI.
objectSetClassURI	Set of object URI.
newTypesMap	Map with new (imported) types of annotations
newTypesMapInfo	Information about newNewTypesMap
ontoAttrs	List with attributes of unknown types of annotations
userGroup	User group in which uploaded types will be shared
superPropertiesStringSet	Set of super properties.
inversePropertiesID	Set of inverse properties URI.
oModel	Ontology model

Definition at line 621 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.processPropertyWS	(	String	prUri,
		String	prName,
		String	comment,
		HashSet< String >	objectSetClassURI,
		UserGroup	userGroup,
		ArrayList< TypeAttrOnto >	ontoAttrs,
		Map< String, AnnotType >	newTypesMap,
		boolean	isAnonymous
	)

private

Process property without subject

creates attribute of unknown type of annotation

Parameters

prUri	Property URI in ontology
prName	Name of property to process
comment	Comment of property to process
objectSetClassURI	Set of object URI.
userGroup	User group in which uploaded types will be shared
ontoAttrs	List with attributes of unknown types of annotations
newTypesMap	Map with new (imported) types of annotations
isAnonymous	True if it is anonymous, false otherwise

Definition at line 1255 of file UploadOntology.java.

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int cz.vutbr.fit.knot.annotations.web.UploadOntology.processRdfPropertyAxioms	(	HashSet< String >	objectSetClassURI,
		HashSet< String >	subjectSetClassURI,
		HashSet< String >	ancestorSetClassURI,
		Set< OWLAxiom >	allAxioms
	)

private

Process set of OWL Axiom and get subject, object and ancestor for rdf:property element.

Parameters

objectSetClassURI	Set of object URI string.
subjectSetClassURI	Set of subject URI string.
ancestorSetClassURI	Set of ancestor URI string.
allAxioms	Set of all axiom to selected property.

Returns: Count of unsupported axioms.

Definition at line 1204 of file UploadOntology.java.

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LinkedList<String> cz.vutbr.fit.knot.annotations.web.UploadOntology.processSuperClass	(	OWLOntology	oModel,
		OWLClass	ontClass
	)

private

Get super classes URI of OWL class.

Parameters

oModel	Ontology model
ontClass	Class object

Returns: List of super classes URI.

Definition at line 1136 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.processUnionOfOneOfIntersectionOf	(	OWLClass	ontClass,
		AnnotType	type,
		OWLOntology	oModel
	)

private

Get axiom of class about unionOf, oneOf and intersectionOf elements and add it to comment.

Parameters

ontClass	OWL class
type	Information about type
oModel	Ontology model

Definition at line 1602 of file UploadOntology.java.

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static AnnotType cz.vutbr.fit.knot.annotations.web.UploadOntology.queryType	(	String	uri,
		EntityManager	em
	)		throws RuntimeException

staticprivate

Query database for type of annotation

Parameters

uri	URI of type of annotation
em	Entity manager

Returns: Returns type of annotation with given URI

Exceptions

RuntimeException If type of annotation was not found, throws exception

Definition at line 3114 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.renameIfAnonymous	(	String	uri,
		BooleanHolder	isAnnonymous
	)

private

Rename uri to acceptable format, if its class is annonymous

Parameters

uri	Original uri
isAnnonymous	Function set value of this object.

Returns: Corrected uri

Definition at line 353 of file UploadOntology.java.

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String cz.vutbr.fit.knot.annotations.web.UploadOntology.renameIfAnonymous ( String uri )

private

Rename uri to acceptable format, if its class is annonymous

Parameters

uri	Original uri

Returns: Corrected uri

Definition at line 368 of file UploadOntology.java.

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void cz.vutbr.fit.knot.annotations.web.UploadOntology.setErrorMessage ( String errorMessage )

Sets error message to be displayed in form

Parameters

errorMessage Error message to be displayed in form

Definition at line 3186 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.setiMethod ( int iMethod )

Sets selected import method

Parameters

iMethod Selected import method

Definition at line 3258 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.setImportLang ( String iLanguage )

Sets selected import language

Parameters

iLanguage Selected import language

Definition at line 3276 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.setOntologyUploaded ( Boolean ontologyUploaded )

Sets uploading indicator

Parameters

ontologyUploaded Uploading indicator

Definition at line 3204 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.setSuccessMessage ( String successMessage )

Sets success message to be displayed in form

Parameters

successMessage Success message to be displayed in form

Definition at line 3222 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.setuGroup ( String uGroup )

Sets user group in which uploaded types will be shared

Parameters

uGroup User group in which uploaded types will be shared

Definition at line 3240 of file UploadOntology.java.

void cz.vutbr.fit.knot.annotations.web.UploadOntology.setUploadedFile ( UploadedFile uploadedFile )

Sets uploaded file

Parameters

uploadedFile Uploaded file

Definition at line 3159 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.upperFirstChar ( String str )

private

Return argument with first upper character.

Parameters

str	Original string.

Returns: Argument with first upper character.

Definition at line 342 of file UploadOntology.java.

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Member Data Documentation

String cz.vutbr.fit.knot.annotations.web.UploadOntology.errorMessage = ""

private

Error message displayed in form

Definition at line 94 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.fileName

private

File name

Definition at line 110 of file UploadOntology.java.

int cz.vutbr.fit.knot.annotations.web.UploadOntology.iMethod = 0

private

Selected import method

Definition at line 118 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.importLang

private

Import language

Definition at line 138 of file UploadOntology.java.

int cz.vutbr.fit.knot.annotations.web.UploadOntology.lNum

private

Language number

Definition at line 142 of file UploadOntology.java.

final int cz.vutbr.fit.knot.annotations.web.UploadOntology.METHOD_0_ERROR = 0

static

Import method 0: If type already exists, error.

Definition at line 126 of file UploadOntology.java.

final int cz.vutbr.fit.knot.annotations.web.UploadOntology.METHOD_1_USE = 1

static

Import method 1: If type already exists, use it (do not create or update).

Definition at line 130 of file UploadOntology.java.

final int cz.vutbr.fit.knot.annotations.web.UploadOntology.METHOD_2_UPDATE = 2

static

Import method 0: If type already exists, update it.

Definition at line 134 of file UploadOntology.java.

Boolean cz.vutbr.fit.knot.annotations.web.UploadOntology.ontologyUploaded = false

private

Uploading indicator

Definition at line 102 of file UploadOntology.java.

int cz.vutbr.fit.knot.annotations.web.UploadOntology.recursiveInverseCount = 0

private

Count of recursive call in inverse property processing.

Definition at line 122 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.successMessage = ""

private

Success message displayed in form

Definition at line 98 of file UploadOntology.java.

String cz.vutbr.fit.knot.annotations.web.UploadOntology.uGroup

private

User group in which uploaded types will be shared

Definition at line 114 of file UploadOntology.java.

UploadedFile cz.vutbr.fit.knot.annotations.web.UploadOntology.uploadedFile = null

private

Uploaded file

Definition at line 106 of file UploadOntology.java.

The documentation for this class was generated from the following file:

src/java/cz/vutbr/fit/knot/annotations/web/UploadOntology.java

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